Function reference

All functions

CHOIR()

Run CHOIR clustering

CHOIRpalette()

Generate color palette

buildTree()

Build full hierarchical clustering tree

compareClusters()

Compare any two clusters using CHOIR's random forest classifier permutation testing approach

plotCHOIR()

Dimensional reduction plot with CHOIR clusters labeled

pruneTree()

Prune clustering tree using random forest classifiers

runCHOIRumap()

Run UMAP on CHOIR dimensionality reductions